PUBLICATIONS
Coelho S, Baete SH, Lemberskiy G, Ades-Aron B, Barrol G, Veraart J, Novikov DS and Fieremans E.
Reproducibility of the Standard Model of diffusion in white matter on clinical MRI systems. (2022) Neuroimage. 257, 119290
Jelescu IO, de Skowronski A, Geffroy F, Palombo M and Novikov DS.
Neurite Exchange Imaging (NEXI): A minimal model of diffusion in gray matter with inter-compartment water exchange. (2022) Neuroimage. 256, 119277
Li C, Fieremans E, Novikov DS, Ge Y and Zhang J.
Measuring water exchange on a preclinical MRI system using filter exchange and diffusion time dependent kurtosis imaging. (2022) Magn Reson Med.
Lee HH, Novikov DS and Fieremans E.
Removal of partial Fourier-induced Gibbs (RPG) ringing artifacts in MRI. (2021) Magn Reson Med. 86, 2733-2750
Lemberskiy G, Feiweier T, Gyftopoulos S, Axel L, Novikov DS and Fieremans E.
Assessment of myofiber microstructure changes due to atrophy and recovery with time-dependent diffusion MRI. (2021) NMR Biomed. 34, e4534
Novikov DS.
The present and the future of microstructure MRI: From a paradigm shift to normal science. (2021) J Neurosci Methods.
Lee HH, Fieremans E and Novikov DS.
Realistic Microstructure Simulator (RMS): Monte Carlo simulations of diffusion in three-dimensional cell segmentations of microscopy images.
Ades-Aron B, Lemberskiy G, Veraart J, Golfinos J, Fieremans E, Novikov DS and Shepherd T.
Improved Task-based Functional MRI Language Mapping in Patients with Brain Tumors through Marchenko-Pastur Principal Component Analysis Denoising. (2021) Radiology. 298, 365-373
Muckley MJ, Ades-Aron B, Papaioannou A, Lemberskiy G, Solomon E, Lui YW, Sodickson DK, Fieremans E, Novikov DS and Knoll F.
Training a neural network for Gibbs and noise removal in diffusion MRI. (2021) Magn Reson Med. 85, 413-428
Zhang J, Lemberskiy G, Moy L, Fieremans E, Novikov DS and Kim SG.
Measurement of cellular-interstitial water exchange time in tumors based on diffusion-time-dependent diffusional kurtosis imaging. (2021) NMR Biomed. 34, e4496
Georgiadis M, Schroeter A, Gao Z, Guizar-Sicairos M, Liebi M, Leuze C, McNab JA, Balolia A, Veraart J, Ades-Aron B, Kim S, Shepherd T, Lee CH, Walczak P, Chodankar S, DiGiacomo P, David G, Augath M, Zerbi V, Sommer S, Rajkovic I, Weiss T, Bunk O, Yang L, Zhang J, Novikov DS, Zeineh M, Fieremans E and Rudin M.
Nanostructure-specific X-ray tomography reveals myelin levels, integrity and axon orientations in mouse and human nervous tissue. (2021) Nat Commun. 12, 2941
Vieni C, Ades-Aron B, Conti B, Sigmund EE, Riviello P, Shepherd TM, Lui YW, Novikov DS and Fieremans E.
Effect of intravoxel incoherent motion on diffusion parameters in normal brain. (2020) Neuroimage. 204, 116228
Adhikari BM, Jahanshad N, Shukla D, Turner J, Grotegerd D, Dannlowski U, Kugel H, Engelen J, Dietsche B, Krug A, Kircher T, Fieremans E, Veraart J, Novikov DS, Boedhoe PSW, van der Werf YD, van den Heuvel OA, Ipser J, Uhlmann A, Stein DJ, Dickie E, Voineskos AN, Malhotra AK, Pizzagalli F, Calhoun VD, Waller L, Veer IM, Walter H, Buchanan RW, Glahn DC, Hong LE, Thompson PM and Kochunov P.
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol. (2019) Brain Imaging Behav. 13, 1453-1467
Lee HH, Yaros K, Veraart J, Pathan JL, Liang FX, Kim SG, Novikov DS and Fieremans E.
Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI. (2019) Brain Struct Funct. 224, 1469-1488
Novikov DS, Fieremans E, Jespersen SN and Kiselev VG.
Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation. (2019) NMR Biomed. 32, e3998
Kochunov P, Donohue B, Mitchell BD, Ganjgahi H, Adhikari B, Ryan M, Medland SE, Jahanshad N, Thompson PM, Blangero J, Fieremans E, Novikov DS, Marcus D, Van Essen DC, Glahn DC, Elliot Hong L and Nichols TE.
Genomic kinship construction to enhance genetic analyses in the human connectome project data. (2019) Hum Brain Mapp. 40, 1677-1688
Veraart J, Fieremans E and Novikov DS.
On the scaling behavior of water diffusion in human brain white matter. (2019) Neuroimage. 185, 379-387
Lee HH, Jespersen SN, Fieremans E and Novikov DS.
The impact of realistic axonal shape on axon diameter estimation using diffusion MRI. (2020) Neuroimage. 223, 117228
Lee HH, Papaioannou A, Novikov DS and Fieremans E.
In vivo observation and biophysical interpretation of time-dependent diffusion in human cortical gray matter. (2020) Neuroimage. 222, 117054
Ayoub R, Ruddy RM, Cox E, Oyefiade A, Derkach D, Laughlin S, Ades-Aron B, Shirzadi Z, Fieremans E, MacIntosh BJ, de Medeiros CB, Skocic J, Bouffet E, Miller FD, Morshead CM and Mabbott DJ.
Assessment of cognitive and neural recovery in survivors of pediatric brain tumors in a pilot clinical trial using metformin. (2020) Nat Med. 26, 1285-1294
Lee HH, Papaioannou A, Kim SL, Novikov DS and Fieremans E.
A time-dependent diffusion MRI signature of axon caliber variations and beading. (2020) Commun Biol. 3, 354
Sun Z, Parra C, Bang JW, Fieremans E, Wollstein G, Schuman JS and Chan KC.
Diffusion Kurtosis Imaging Reveals Optic Tract Damage That Correlates with Clinical Severity in Glaucoma. (2020) Annu Int Conf IEEE Eng Med Biol Soc. 2020, 1746-1749
Dong JW, Jelescu IO, Ades-Aron B, Novikov DS, Friedman K, Babb JS, Osorio RS, Galvin JE, Shepherd TM and Fieremans E.
Diffusion MRI biomarkers of white matter microstructure vary nonmonotonically with increasing cerebral amyloid deposition. (2020) Neurobiol Aging. 89, 118-128
Veraart J, Nunes D, Rudrapatna U, Fieremans E, Jones DK, Novikov DS and Shemesh N.
Nonivasive quantification of axon radii using diffusion MRI. (2020) Elife. 9
Georgiadis M, Schroeter A, Gao Z, Guizar-Sicairos M, Novikov DS, Fieremans E and Rudin M.
Retrieving neuronal orientations using 3D scanning SAXS and comparison with diffusion MRI. (2020) Neuroimage. 204, 116214
Novikov DS, Veraart J, Jelescu IO and Fieremans E.
Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI. (2018) Neuroimage. 174, 518-538
Novikov DS, Kiselev VG and Jespersen SN.
On modeling. (2018) Magn Reson Med. 79, 3172-3193
Chung S, Fieremans E, Wang X, Kucukboyaci NE, Morton CJ, Babb J, Amorapanth P, Foo FA, Novikov DS, Flanagan SR, Rath JF and Lui YW.
White Matter Tract Integrity: An Indicator of Axonal Pathology after Mild Traumatic Brain Injury. (2018) J Neurotrauma. 35, 1015-1020
Kochunov P, Dickie EW, Viviano JD, Turner J, Kingsley PB, Jahanshad N, Thompson PM, Ryan MC, Fieremans E, Novikov D, Veraart J, Hong EL, Malhotra AK, Buchanan RW, Chavez S and Voineskos AN.
Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies. (2018) Hum Brain Mapp. 39, 1015-1023
Chung S, Fieremans E, Kucukboyaci NE, Wang X, Morton CJ, Novikov DS, Rath JF and Lui YW.
Working Memory And Brain Tissue Microstructure: White Matter Tract Integrity Based On Multi-Shell Diffusion MRI. (2018) Sci Rep. 8, 3175
Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM and Kochunov P
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline. (2018) Pac Symp Biocomput. 23, 307-318
Novikov DS, Reisert M and Kiselev VG.
Effects of mesoscopic susceptibility and transverse relaxation on diffusion NMR. (2018) J Magn Reson. 293, 134-144
Lemberskiy G, Fieremans E, Veraart J, Deng FM, Rosenkrantz AB and Novikov DS.
Characterization of prostate microstructure using water diffusion and NMR relaxation. (2018) Front Phys. 6
Veraart J, Novikov DS and Fieremans E.
TE dependent Diffusion Imaging (TEdDI) distinguishes between compartmental T relaxation times. (2018) Neuroimage. 182, 360-369
Winters KV, Reynaud O, Novikov DS, Fieremans E and Kim SG.
Quantifying myofiber integrity using diffusion MRI and random permeable barrier modeling in skeletal muscle growth and Duchenne muscular dystrophy model in mice. (2018) Magn Reson Med. 80, 2094-2108
Lee HH, Fieremans E and Novikov DS.
What dominates the time dependence of diffusion transverse to axons: Intra- or extra-axonal water?. (2018) Neuroimage. 182, 500-510
Fieremans E and Lee HH.
Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook. (2018) Neuroimage. 182, 39-61
Kiselev VG and Novikov DS.
Transverse NMR relaxation in biological tissues. (2018) Neuroimage. 182, 149-168
Ades-Aron B, Veraart J, Kochunov P, McGuire S, Sherman P, Kellner E, Novikov DS and Fieremans E.
Evaluation of the accuracy and precision of the diffusion parameter EStImation with Gibbs and NoisE removal pipeline. (2018) Neuroimage. 183, 532-543
Adhikari BM, Jahanshad N, Shukla D, Glahn DC, Blangero J, Fox PT, Reynolds RC, Cox RW, Fieremans E, Veraart J, Novikov DS, Nichols TE, Hong LE, Thompson PM and Kochunov P.
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline. (2018) Hum Brain Mapp. 39, 4893-4902
Fieremans E, Lemberskiy G, Veraart J, Sigmund EE, Gyftopoulos S and Novikov DS.
In vivo measurement of membrane permeability and myofiber size in human muscle using time-dependent diffusion tensor imaging and the random permeable barrier model. (2017) NMR Biomed. 30
Ryan M, Kochunov P, Rowland LM, Mitchell BD, Wijtenburg SA, Fieremans E, Veraart J, Novikov DS, Du X, Adhikari B, Fisseha F, Bruce H, Chiappelli J, Sampath H, Ament S, O'Connell J, Shuldiner AR and Hong LE.
Lipid Metabolism, Abdominal Adiposity, and Cerebral Health in the Amish. (2017) Obesity (Silver Spring). 25, 1876-1880
Lemberskiy G, Baete SH, Cloos MA, Novikov DS and Fieremans E.
Validation of surface-to-volume ratio measurements derived from oscillating gradient spin echo on a clinical scanner using anisotropic fiber phantoms. (2017) NMR Biomed. 30
Lemberskiy G, Rosenkrantz AB, Veraart J, Taneja SS, Novikov DS and Fieremans E.
Time-Dependent Diffusion in Prostate Cancer. (2017) Invest Radiol. 52, 405-411
Papaioannou A, Novikov DS, Fieremans E and Boutis GS.
Observation of structural universality in disordered systems using bulk diffusion measurement. (2017) Phys Rev E. 96, 061101
Veraart J, Fieremans E and Novikov DS.
Diffusion MRI noise mapping using random matrix theory. (2016) Magn Reson Med. 76, 1582-1593
Veraart J, Novikov DS, Christiaens D, Ades-Aron B, Sijbers J and Fieremans E.
Denoising of diffusion MRI using random matrix theory. (2016) Neuroimage. 142, 394-406
Veraart J, Fieremans E, Jelescu IO, Knoll F and Novikov DS.
Gibbs ringing in diffusion MRI. (2016) Magn Reson Med. 76, 301-14
de Kouchkovsky I, Fieremans E, Fleysher L, Herbert J, Grossman RI and Inglese M.
Quantification of normal-appearing white matter tract integrity in multiple sclerosis: a diffusion kurtosis imaging study. (2016) J Neurol. 263, 1146-55
Fieremans E, Burcaw LM, Lee HH, Lemberskiy G, Veraart J and Novikov DS.
In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter. (2016) Neuroimage. 129, 414-427
Jelescu IO, Veraart J, Fieremans E and Novikov DS.
Degeneracy in model parameter estimation for multi-compartmental diffusion in neuronal tissue. (2016) NMR Biomed. 29, 33-47
Fieremans E, Burcaw LM, Lee HH, Lemberskiy G, Veraart J and Novikov DS.
In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter. (2016) Neuroimage. 129, 414-427
Burcaw LM, Fieremans E and Novikov DS.
Mesoscopic structure of neuronal tracts from time-dependent diffusion. (2015) Neuroimage. 114, 18-37
Grossman EJ, Kirov II, Gonen O, Novikov DS, Davitz MS, Lui YW, Grossman RI, Inglese M and Fieremans E.
N-acetyl-aspartate levels correlate with intra-axonal compartment parameters from diffusion MRI. (2015) Neuroimage. 118, 334-43
Jelescu IO, Veraart J, Adisetiyo V, Milla SS, Novikov DS and Fieremans E.
One diffusion acquisition and different white matter models: how does microstructure change in human early development based on WMTI and NODDI?. (2015) Neuroimage. 107, 242-256
Benitez A, Fieremans E, Jensen JH, Falangola MF, Tabesh A, Ferris SH and Helpern JA.
White matter tract integrity metrics reflect the vulnerability of late-myelinating tracts in Alzheimer's disease. (2014) Neuroimage Clin. 4, 64-71
Nisenbaum EJ, Novikov DS and Lui YW.
The presence and role of iron in mild traumatic brain injury: an imaging perspective. (2014) J Neurotrauma. 31, 301-7
Kiselev VG and Novikov DS.
Comment on "Magnetic resonance imaging by synergistic diffusion-diffraction patterns". (2013) Phys Rev Lett. 110, 109801
Fieremans E, Pires A and Jensen JH.
A simple isotropic phantom for diffusional kurtosis imaging. (2012) Magn Reson Med. 68, 537-42
Hui ES, Fieremans E, Jensen JH, Tabesh A, Feng W, Bonilha L, Spampinato MV, Adams R and Helpern JA.
Stroke assessment with diffusional kurtosis imaging. (2012) Stroke. 43, 2968-73
Novikov DS, Fieremans E, Jensen JH and Helpern JA.
Random walk with barriers. (2011) Nat Phys. 7, 508-514
Fieremans E, Jensen JH and Helpern JA.
White matter characterization with diffusional kurtosis imaging. (2011) Neuroimage. 58, 177-88
Novikov DS and Kiselev VG.
Surface-to-volume ratio with oscillating gradients. (2011) J Magn Reson. 210, 141-5
Fieremans E, Novikov DS, Jensen JH and Helpern JA.
Monte Carlo study of a two-compartment exchange model of diffusion. (2010) NMR Biomed.
Novikov DS and Kiselev VG.
Effective medium theory of a diffusion-weighted signal. (2010) NMR Biomed. 23, 682-97
Fieremans E, De Deene Y, Delputte S, Ozdemir MS, D'Asseler Y, Vlassenbroeck J, Deblaere K, Achten E and Lemahieu I.
Simulation and experimental verification of the diffusion in an anisotropic fiber phantom. (2008) J Magn Reson. 190, 189-99
Fieremans E, De Deene Y, Delputte S, Ozdemir MS, Achten E and Lemahieu I.
The design of anisotropic diffusion phantoms for the validation of diffusion weighted magnetic resonance imaging. (2008) Phys Med Biol. 53, 5405-19